• OlegSmirnov
• BuildingAipsppOnDebianAmd64

19/04/06

Following the AIPS++ System Manual, doing a sneeze was straightforward enough, but lots of things failed. Specifically:

1. glish needs to be built separately. Go into code/aips/glish and type make.

2. glish needs the flex-old package to build, with newer flexes it falls over.

3. plain pgplot5 is not good enough, it needs XmPgplot.h. So I had to build PGPLOT from source, which is an extra pain.

4. linking binaries is plagued by errors such as "foo referenced in section `.rodata' of bar defined in discarded section blah". Googling produced no clear answers, but suggested that binutils may be to blame. I have therefore downgraded binutils and everything that entailed (gcc etc.) to the stable branch, let's see if the build is any better.

• 4a. OK, dowgrading binutils to binutils/stable 2.15-6 seems to have fixed the above linking errors.

5. Now the remaining problem is in casa/wcslib/wcsulex.l and wcsutrn.l:

• /aips++/amd64/code/casa/wcslib/wcsulex.l: In function `yy_get_next_buffer':
  /aips++/amd64/code/casa/wcslib/wcsulex.l:1215: warning: implicit declaration of function `read'
  In file included from /aips++/amd64/code/casa/wcslib/wcsulex.l:1540:
  /usr/include/unistd.h: At top level:
  /usr/include/unistd.h:312: error: conflicting types for 'read'
  /aips++/amd64/code/casa/wcslib/wcsulex.l:1215: error: previous implicit declaration of 'read' was here
  

  Oh great, this was fixed by installing flex again over flex-old. Too bad they're mutually exclusive. So, you must have one version of flex on hand to build glish, and another to build wcslib... joy of joys...

6. OK, most things actually link now. Remaining errors:

• /aips++/amd64/code/demo/implement/MeasurementEquations/pSimulator.cc: In function `int main()':
  /aips++/amd64/code/demo/implement/MeasurementEquations/pSimulator.cc:174: error: no matching function for call to `image::image(casa::String&, casa::String&, casa::Index&, casa::Bool&, casa::Bool&)'
  /aips++/amd64/code/demo/implement/MeasurementEquations/../../../appsglish/apps/app_image/DOimage.h:157: note: candidates are: image::image(const casa::ImageInterface<casa::Float>&)
  /aips++/amd64/code/demo/implement/MeasurementEquations/../../../appsglish/apps/app_image/DOimage.h:154: note:                 image::image(const image&)
  /aips++/amd64/code/demo/implement/MeasurementEquations/../../../appsglish/apps/app_image/DOimage.h:151: note:                 image::image(const casa::String&, const casa::String&, const casa::GlishRecord&, const casa::String&, casa::Bool, casa::Bool)
  /aips++/amd64/code/demo/implement/MeasurementEquations/../../../appsglish/apps/app_image/DOimage.h:146: note:                 image::image(const casa::String&, const casa::String&, casa::Bool, const casa::GlishRecord&)
  /aips++/amd64/code/demo/implement/MeasurementEquations/../../../appsglish/apps/app_image/DOimage.h:142: note:                 image::image(const casa::String&, const casa::Vector<casa::String>&, casa::Index, casa::Bool, casa::Bool, casa::Bool)
  /aips++/amd64/code/demo/implement/MeasurementEquations/../../../appsglish/apps/app_image/DOimage.h:138: note:                 image::image(const casa::String&, const casa::Vector<casa::Int>&, const casa::GlishRecord&, casa::Bool, casa::Bool, casa::Bool)
  /aips++/amd64/code/demo/implement/MeasurementEquations/../../../appsglish/apps/app_image/DOimage.h:133: note:                 image::image(const casa::String&, const casa::Array<casa::Float>&, const casa::GlishRecord&, casa::Bool, casa::Bool, casa::Bool)
  /aips++/amd64/code/demo/implement/MeasurementEquations/../../../appsglish/apps/app_image/DOimage.h:128: note:                 image::image(const casa::String&, const casa::String&, casa::Index, casa::Index, casa::Bool, casa::Bool, casa::Bool)
  /aips++/amd64/code/demo/implement/MeasurementEquations/../../../appsglish/apps/app_image/DOimage.h:123: note:                 image::image(const casa::String&)
  /aips++/amd64/code/demo/implement/MeasurementEquations/pSimulator.cc:233: error: no matching function for call to `imager::setimage(casa::Int&, casa::Int&, casa::Quantity&, casa::Quantity&, casa::String&, casa::Bool&, casa::MDirection&, casa::Quantity&, casa::Quantity&, casa::String&, casa::Int&, casa::Int&, casa::Int&, casa::MRadialVelocity&, casa::MRadialVelocity&, casa::Vector<casa::Int>&, casa::Int&, casa::Int&, casa::Quantity&)'
  /aips++/amd64/code/demo/implement/MeasurementEquations/../../../appsglish/apps/imager/DOimager.h:171: note: candidates are: casa::Bool imager::setimage(casa::Int, casa::Int, const casa::Quantity&, const casa::Quantity&, const casa::String&, casa::Bool, const casa::MDirection&, const casa::Quantity&, const casa::Quantity&, const casa::String&, casa::Int, casa::Int, casa::Int, const casa::MRadialVelocity&, const casa::MRadialVelocity&, const casa::Vector<casa::Int>&, casa::Int, casa::Int, const casa::Quantity&, const casa::Float&, const casa::Float&)
  gmake[3]: [/aips++/amd64/linux_gnu/tmp/demo/opt/pSimulator.lock] Error 1 (ignored)
  
  /usr/bin/ld: /aips++/amd64/linux_gnu/tmp/display/opt/gDisplay.o: relocation R_X86_64_32 can not be used when making a shared object; recompile with -fPIC
  /aips++/amd64/linux_gnu/tmp/display/opt/gDisplay.o: could not read symbols: Bad value
  gmake[3]: [/aips++/amd64/linux_gnu/lib/gDisplay.so] Error 1 (ignored)
  
  g/aips++/amd64/code/appsglish/apps/msplot_new/DOmsplot.cc: In member function `casa::Int msplot<T>::flagdata(casa::Int, casa::Int) [with T = casa::Float]':
  /aips++/amd64/code/appsglish/apps/msplot_new/DOmsplot.h:212:   instantiated from here
  /aips++/amd64/code/appsglish/apps/msplot_new/DOmsplot.cc:1305: error: no matching function for call to `casa::MsPlot<casa::Float>::flagData(casa::PtrBlock<casa::BasePlot<casa::Float>*>&, casa::TPPlotter<casa::Float>&, int, casa::Int&, casa::Int&)'
  /aips++/amd64/code/include/tables/TablePlot/TablePlot.h:338: note: candidates are: casa::Int casa::TablePlot<T>::flagData(casa::PtrBlock<casa::BasePlot<T>*>&, casa::TPPlotter<T>&, casa::Int, casa::Int, casa::Int, casa::Int) [with T = casa::Float]
  /aips++/amd64/code/appsglish/apps/msplot_new/DOmsplot.h:212:   instantiated from here
  /aips++/amd64/code/appsglish/apps/msplot_new/DOmsplot.cc:1310: error: no matching function for call to `casa::MsPlot<casa::Float>::flagData(casa::PtrBlock<casa::BasePlot<casa::Float>*>&, casa::TPPlotter<casa::Float>&, int, casa::Int&, casa::Int&)'
  /aips++/amd64/code/include/tables/TablePlot/TablePlot.h:338: note: candidates are: casa::Int casa::TablePlot<T>::flagData(casa::PtrBlock<casa::BasePlot<T>*>&, casa::TPPlotter<T>&, casa::Int, casa::Int, casa::Int, casa::Int) [with T = casa::Float]
  gmake[3]: [/aips++/amd64/linux_gnu/bin/msplot_new] Error 1 (ignored)
  

  Of these, only gDisplay.so appears to be worth fixing...