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public:install_lofar_centos6.5 [2017-01-04 15:41] – [3. Installation the LOFAR software] Frank Breitlingpublic:install_lofar_centos6.5 [2017-01-09 17:18] – [1. Setup of build environment] added /opt/gcc-4.8.3/lib64 to LD_LIBRARY_PATH Frank Breitling
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 The cluster also provides a //module system// to load newer versions of the installed software. \\ The cluster also provides a //module system// to load newer versions of the installed software. \\
-We will activate it and replace the default version of gcc 4.4.7 with gcc 4.8.3 for C++11 support.+Its used below to replace the default version of gcc 4.4.7 with gcc 4.8.3 for C++11 support.
  
  
 === 1.1 Paths === === 1.1 Paths ===
  
-This instruction will install all packages in $HOME/local/. \\ +The following changes are required: 
-And for the installation of Pyrap (python-casacore) we need a Python path with write access. \\ + 
-So I added the following lines to $HOME/.bashrc:+  * A more recent version of GCC with C++11 required by Casacore is activated through the module system. This also requires adding /opt/gcc-4.8.3/lib64 to the LD_LIBRARY_PATH since otherwise Pyrap will not find it and complain with
 <file> <file>
-source /usr/share/Modules/init/sh  # activate module system, needs to be done first +File "/home/fkbreitl/local/lib64/python2.6/site-packages/python_casacore-2.1.2-py2.6-linux-x86_64.egg/casacore/tables/table.py", line 43, in <module> 
-module load gcc  # use gcc 4.8.3 (instead of 4.4.7) for C++11 support+    from ._tables import Table 
 +ImportError: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /home/fkbreitl/local/lib/libboost_python.so.1.63.0) 
 +</file>
  
 +  * The packages will be installed in $HOME/local/. \\
 +  * Pyrap (python-casacore) needs a writable Python path. \\
 +
 +This adds the following lines to $HOME/.bashrc:
 +<file>
 +source /usr/share/Modules/init/sh  # activate module system, needs to be done first
 +module load gcc/4.8.3  # use gcc 4.8.3 (instead of 4.4.7) for C++11 support
 +export LD_LIBRARY_PATH=/opt/gcc-4.8.3/lib64:$HOME/local/lib:$LD_LIBRARY_PATH
 export PYTHONPATH=$HOME/local/lib64/python2.6/site-packages:$PYTHONPATH export PYTHONPATH=$HOME/local/lib64/python2.6/site-packages:$PYTHONPATH
-export LD_LIBRARY_PATH=$HOME/local/lib:$LD_LIBRARY_PATH 
 export PATH=$HOME/local:$PATH export PATH=$HOME/local:$PATH
 </file> </file>
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 wget ftp://ftp.atnf.csiro.au/pub/software/wcslib/wcslib.tar.bz2 wget ftp://ftp.atnf.csiro.au/pub/software/wcslib/wcslib.tar.bz2
 tar xf packages/wcslib.tar.bz2 tar xf packages/wcslib.tar.bz2
-cd wcslib-5.15/+cd wcslib-5.15  # (-5.6)
 ./configure --prefix=$HOME/local/ ./configure --prefix=$HOME/local/
 time make -j install time make -j install
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 <file> <file>
-V_FFTW=3.3.5+V_FFTW=3.3.5  # 3.3.4
 cd $HOME/local/src/ cd $HOME/local/src/
 wget http://www.fftw.org/fftw-$V_FFTW.tar.gz wget http://www.fftw.org/fftw-$V_FFTW.tar.gz
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 <file> <file>
 +# 2.1, 2.2
 cd ~/local/src/ cd ~/local/src/
 git clone https://github.com/casacore/casacore git clone https://github.com/casacore/casacore
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 <file> <file>
-V_AOF=2.9.0+V_AOF=2.9.0  # 2.7.1, 2.8.0
 cd ~/local/src/ cd ~/local/src/
 wget http://downloads.sourceforge.net/project/aoflagger/aoflagger-$AOVER/aoflagger-$V_AOF.tar.bz2 wget http://downloads.sourceforge.net/project/aoflagger/aoflagger-$AOVER/aoflagger-$V_AOF.tar.bz2
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 cd ~/local/src/ cd ~/local/src/
 RELEASE=LOFAR-Release-2_19 && svn checkout --ignore-externals -N https://svn.astron.nl/LOFAR/branches/$RELEASE RELEASE=LOFAR-Release-2_19 && svn checkout --ignore-externals -N https://svn.astron.nl/LOFAR/branches/$RELEASE
 +# 2_16_4, 2_16, 2_12
 #RELEASE=LOFAR && svn checkout --ignore-externals -N https://svn.astron.nl/LOFAR/trunk $RELEASE #RELEASE=LOFAR && svn checkout --ignore-externals -N https://svn.astron.nl/LOFAR/trunk $RELEASE
 svn update $RELEASE/CMake svn update $RELEASE/CMake
  • Last modified: 2017-03-08 15:27
  • by 127.0.0.1